PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0014200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 421aa    MW: 44263.7 Da    PI: 4.477
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0014200.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.6e-12157200755
                        HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        e+Er+RR+++N  + +Lr+l+P+      +K++ a+iL  A++YI  Lq
  ORGLA02G0014200.1 157 EAERKRRKKLNGHLYKLRSLVPNI-----TKMDRASILGDAIDYIVGLQ 200
                        89*********************7.....7***************9887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.80E-14149211No hitNo description
PROSITE profilePS5088815.37150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-18151222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-15156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-15157212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-10157200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MAEEQQMAEL VMAQCGGGGG GGAGDDGGGQ AWPPPETPSF QWDGGADAQR LMYGGSSLNL  60
FDAAAADDDP FLGGGGGGGG DAVGDAAAAA GAWPYAGMAM SEPSVAVAQE QMQHAAGGGV  120
AESGSEGREL HGGDPEDDGD GEGRSGGAKR QQCKNLEAER KRRKKLNGHL YKLRSLVPNI  180
TKMDRASILG DAIDYIVGLQ KQVKELQDEL EDNHVHHKPP DVLVDHPPPA SLVGLDNDDA  240
SPPNSHQQQP PLAVAGSSSR RSNKDPAMTD DKVGGGGGGG HRMEPQLEVR QVQGNELFVQ  300
VLWEHKPGGF VRLMDAMNAL GLEVINVNVT TYKTLVLNVF RVMVRDNEVA MQADRVRDSL  360
LEVTRETYPG VWPSPQEEDD AKFDGGDGGQ AAAAAAAAGG EHYHDEVGGG YHQHLHYLAF  420
D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158165ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067610.0AK106761.1 Oryza sativa Japonica Group cDNA clone:002-115-D12, full insert sequence.
GenBankAK1195800.0AK119580.1 Oryza sativa Japonica Group cDNA clone:002-117-B12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625730.10.0PREDICTED: transcription factor ABORTED MICROSPORES
SwissprotQ6YUS30.0TDR_ORYSJ; Transcription factor TDR
TrEMBLI1NWN60.0I1NWN6_ORYGL; Uncharacterized protein
STRINGORGLA02G0014200.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55303449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-51bHLH family protein